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The
collection strategy
Plants use a battery of chemical and physical defenses to protect
themselves from herbivores and pathogens. Most bioprospecting strategies
focus on collecting mature leaves, however, ecological research
by Drs. Coley and Kursar has shown that young leaves may be a more
promising source of useful pharmaceuticals. Young leaves cannot
be tough, an effective defense for mature leaves, so chemical defenses
are the only option. Young leaves therefore contain higher concentrations
of defensive compounds, as well as compounds that are not found
in the mature leaves.
The
Botanists
The Panama ICBG employs three botanists who are in charge of collections
and recollections of plants throughout the country. Since the inception
of the project in 1998, the botanists - Rafael Aizprúa, Blanca
Arauz and Nayda Flores - have collected young and mature leaves
from over 1000 plant species. They have herbarium vouchers of all
samples located at the Smithsonian Tropical Research Institute (STRI)
and the University of Panama. The taxonomic identity of all species
with activity is confirmed by Professor Mireya Correa, Director
of the National Herbarium of Panama.
Collection
Techniques
The botanists travel to parks and protected areas in Panama to make
their collections. Small quantities (<100g) of young leaves are
collected from species that have not previously been sampled. For
each plant, the location is noted using GPS (Global Positioning
System) and the plant is photographed and marked with a tag. Three
botanical samples are taken, one for the herbarium at the University
of Panama, one for the herbarium at STRI, and one for the Panama
ICBG project. If plants are sterile, they are revisited regularly
until fruiting or flowering allows a positive taxonomic identification.
If plants are active in bioassays, botanists return and make larger
collections that allow bioassay guided fractionation and identification
of active compounds. Making small initial collections minimizes
the impact on plant populations.
Sample
processing and extraction techniques
Once the samples are collected it is important to process them rapidly
in order to avoid any degradation or decomposition of the chemical
compounds. For that reason, as soon as the botanists return from
the field, the chemists (Nivia Ríos and Johant Lakey) extract
the samples. Samples are extracted in alcohol, filtered, lyophilized
and stored at -70oC. For samples collected on Barro Colorado Island
(BCI), extractions were done in the laboratory located on BCI. Currently
collections are occurring at other sites within Panama and the extraction
laboratory is located at the Earl S. Tupper Center of STRI in Panama
City. When collections are made at sites more than a few hours from
STRI, the botanists begin the extraction process by cutting leaf
samples into ethanol and storing them on dry ice until further homogenization
and filtration at the STRI lab.
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